☰ Navigation Tabs
Structure of the human RbAp48-MTA1(656-686) complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other RbAp48
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 10% w/v PEG 20000, 20% v/v PEGMME 550, 0.2 M 1,6-hexanediol, 0.2 M 1-butanol, 0.2 M (RS)-1,2-propanediol, 0.2 M 2-propanol, 0.2 M 1,4-butanediol, 0.2 M 1,3-propanediol, and 0.1 M MES/imidazole pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.7 54.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.56 α = 90 b = 59.48 β = 90.12 c = 104.63 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2012-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9809 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 52.31 99.6 0.122 10.6 3.5 35120
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 99.8 0.448 2.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT RbAp48 2.5 20 34859 1746 99.36 0.1809 0.1785 0.1849 0.2251 0.2269 RANDOM 25.706
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 1.11 -1.06 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.472 r_dihedral_angle_4_deg 16.288 r_dihedral_angle_3_deg 15.153 r_dihedral_angle_1_deg 6.828 r_mcangle_it 3.308 r_angle_other_deg 2.378 r_mcbond_it 1.921 r_mcbond_other 1.921 r_angle_refined_deg 1.489 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.472 r_dihedral_angle_4_deg 16.288 r_dihedral_angle_3_deg 15.153 r_dihedral_angle_1_deg 6.828 r_mcangle_it 3.308 r_angle_other_deg 2.378 r_mcbond_it 1.921 r_mcbond_other 1.921 r_angle_refined_deg 1.489 r_chiral_restr 0.086 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6487 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PDB_EXTRACT data extraction PHASER phasing