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Structure of ancestral PyrR protein (AncGREENPyrR)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 293 1.2M Ammonium Sulfate, 0.08M Na acetate pH4.8, 20% Glycerol
Crystal Properties Matthews coefficient Solvent content 2.88 57.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.43 α = 90 b = 67.03 β = 101.06 c = 56.82 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2012-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.92 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20.27 95.4 5.6 2.9 54426
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.6 60.57 54426 2766 95.26 0.21623 0.21467 0.2242 0.24804 0.2557 RANDOM 9.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 -0.51 -0.41 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.489 r_dihedral_angle_3_deg 14.812 r_dihedral_angle_4_deg 12.372 r_dihedral_angle_1_deg 6.131 r_long_range_B_refined 5.022 r_long_range_B_other 4.825 r_scangle_other 3.431 r_angle_refined_deg 2.245 r_scbond_it 2.217 r_scbond_other 2.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.489 r_dihedral_angle_3_deg 14.812 r_dihedral_angle_4_deg 12.372 r_dihedral_angle_1_deg 6.131 r_long_range_B_refined 5.022 r_long_range_B_other 4.825 r_scangle_other 3.431 r_angle_refined_deg 2.245 r_scbond_it 2.217 r_scbond_other 2.205 r_mcangle_other 2.051 r_mcangle_it 2.05 r_mcbond_it 1.306 r_mcbond_other 1.3 r_angle_other_deg 0.98 r_chiral_restr 0.141 r_bond_refined_d 0.023 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2557 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement