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Acek (D477A) ICDH complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 2mM DTT, 10% glycerol, 0.1M MES pH 6.0, 25%~30% PEG 300
Crystal Properties Matthews coefficient Solvent content 3.95 68.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 198.16 α = 90 b = 198.16 β = 90 c = 156.071 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 19.96 99 0.157 0.044 0.989 14.5 13.4 27331
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.5 98.5 0.91 0.322 0.552 2.6 8 4291
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.3 29.97 414 99.2188 0.1803 0.1767 0.2208 0.2469 0.2702 RANDOM 81.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.95 -0.95 3.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.17 r_dihedral_angle_3_deg 21.974 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_1_deg 7.87 r_angle_refined_deg 1.694 r_angle_other_deg 0.917 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.17 r_dihedral_angle_3_deg 21.974 r_dihedral_angle_4_deg 19.464 r_dihedral_angle_1_deg 7.87 r_angle_refined_deg 1.694 r_angle_other_deg 0.917 r_chiral_restr 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15634 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms 100
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction MOSFLM data reduction