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Crystal structure of mouse comt bound to an inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NW9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 277 2.0 M NaCl and 0.1 M Na-acetate pH 4.6 at 4C, drop ratio 100nl + 100nl
Crystal Properties Matthews coefficient Solvent content 2.93 58.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.584 α = 90 b = 98.584 β = 90 c = 115.104 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2012-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.97 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 50 99.95 22.65 4.7 17238
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.06 2.1 100 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3NW9 2.06 41.17 17870 632 99.95 0.1472 0.145 0.1987 0.2422 RANDOM 29.179
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.7 1.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.538 r_sphericity_free 38.03 r_dihedral_angle_4_deg 16.544 r_dihedral_angle_3_deg 14.665 r_sphericity_bonded 9.359 r_dihedral_angle_1_deg 4.746 r_mcangle_it 3.262 r_mcbond_it 2.541 r_mcbond_other 2.533 r_rigid_bond_restr 2.402
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.538 r_sphericity_free 38.03 r_dihedral_angle_4_deg 16.544 r_dihedral_angle_3_deg 14.665 r_sphericity_bonded 9.359 r_dihedral_angle_1_deg 4.746 r_mcangle_it 3.262 r_mcbond_it 2.541 r_mcbond_other 2.533 r_rigid_bond_restr 2.402 r_angle_refined_deg 1.191 r_angle_other_deg 0.74 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1610 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction