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X-ray crystal structure of the S1 and 5'-sensor domains of RNase E from Caulobacter crescentus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M Tris pH 8.5, 10% (v/v) Ethanol
Crystal Properties Matthews coefficient Solvent content 2.31 46.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.53 α = 90 b = 62.53 β = 90 c = 155.55 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-09-17 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9536 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 48.7 97 0.078 12.8 5.2 18069 36.62
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 48.7 17099 928 95.81 0.2138 0.21165 0.212 0.25434 0.2513 RANDOM 55.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.35 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.417 r_dihedral_angle_4_deg 23.201 r_dihedral_angle_3_deg 19.88 r_long_range_B_refined 12.549 r_dihedral_angle_1_deg 8.683 r_mcangle_it 4.413 r_scbond_it 3.735 r_mcbond_it 2.917 r_angle_refined_deg 2.31 r_chiral_restr 0.214
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.417 r_dihedral_angle_4_deg 23.201 r_dihedral_angle_3_deg 19.88 r_long_range_B_refined 12.549 r_dihedral_angle_1_deg 8.683 r_mcangle_it 4.413 r_scbond_it 3.735 r_mcbond_it 2.917 r_angle_refined_deg 2.31 r_chiral_restr 0.214 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1488 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement