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Crystal structure of Thermus thermophilis transhydrogeanse domain II dimer SeMet derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 lipidic subic phase 8.5 298 100 mM Tris pH 8.5, 350 mM NH4-formate, 100mM Na-thiocynate, and 18% (v/v) 1-4-butanediol, lipidic subic phase, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.49 64.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.566 α = 90 b = 86.87 β = 94.91 c = 99.161 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.97919 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 97.93 94.2 21446
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.89 97.9 94.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.89 97.93 21446 1159 93.59 0.22483 0.22155 0.2352 0.28783 0.3035 RANDOM 38.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.61 -1.99 -1.07 -2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.43 r_dihedral_angle_3_deg 22.876 r_dihedral_angle_4_deg 21.303 r_long_range_B_refined 7.628 r_dihedral_angle_1_deg 6.12 r_mcangle_it 4.099 r_scbond_it 3.057 r_mcbond_it 2.468 r_angle_refined_deg 1.898 r_chiral_restr 0.126
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.43 r_dihedral_angle_3_deg 22.876 r_dihedral_angle_4_deg 21.303 r_long_range_B_refined 7.628 r_dihedral_angle_1_deg 6.12 r_mcangle_it 4.099 r_scbond_it 3.057 r_mcbond_it 2.468 r_angle_refined_deg 1.898 r_chiral_restr 0.126 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5191 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose NECAT data collection SHELXS phasing REFMAC refinement XDS data reduction SCALA data scaling