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Crystal structure of cleaved guinea pig L-asparaginase type III in complex with L-aspartate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 0.1 M MES pH 6.0, 0.2 M ammonium sulfate, 13-15% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.8 67.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.58 α = 90 b = 114.58 β = 90 c = 138.59 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2013-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97911 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 30 98.7 0.076 14.88 4.1 47818 47199
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.43 95.9 0.537 3.19 4.1 7285
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.29 29.65 44450 44450 2389 97.94 0.18447 0.18447 0.18246 0.1827 0.2211 0.223 RANDOM 41.882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 16.87 16.87 -33.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.643 r_dihedral_angle_4_deg 18.163 r_dihedral_angle_3_deg 16.092 r_dihedral_angle_1_deg 6.525 r_long_range_B_refined 6.37 r_long_range_B_other 6.37 r_scangle_other 4.368 r_mcangle_it 4.366 r_mcangle_other 4.365 r_scbond_it 2.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.643 r_dihedral_angle_4_deg 18.163 r_dihedral_angle_3_deg 16.092 r_dihedral_angle_1_deg 6.525 r_long_range_B_refined 6.37 r_long_range_B_other 6.37 r_scangle_other 4.368 r_mcangle_it 4.366 r_mcangle_other 4.365 r_scbond_it 2.93 r_scbond_other 2.923 r_mcbond_it 2.893 r_mcbond_other 2.893 r_angle_refined_deg 1.498 r_angle_other_deg 0.789 r_chiral_restr 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4320 Nucleic Acid Atoms Solvent Atoms 78 Heterogen Atoms 20
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling