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Crystal structure of STK4 (MST1) SARAH domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277.15 2.3M sodium formate, 0.1M acetate pH 4.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.57 52.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.26 α = 90 b = 63.75 β = 90 c = 144.74 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-04-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 63.75 98.4 0.064 11.7 4.4 34708 34702 34.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 98 0.768 2.2 4.5 4951
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2 55.27 2 34702 32937 1736 98.02 0.264 0.20866 0.2069 0.2148 0.24033 0.2403 RANDOM 49.839
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.9 0.77 -3.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.188 r_dihedral_angle_4_deg 15.799 r_dihedral_angle_3_deg 14.092 r_long_range_B_refined 8.776 r_long_range_B_other 8.775 r_scangle_other 6.005 r_dihedral_angle_1_deg 4.84 r_scbond_it 3.826 r_scbond_other 3.825 r_mcangle_it 3.256
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.188 r_dihedral_angle_4_deg 15.799 r_dihedral_angle_3_deg 14.092 r_long_range_B_refined 8.776 r_long_range_B_other 8.775 r_scangle_other 6.005 r_dihedral_angle_1_deg 4.84 r_scbond_it 3.826 r_scbond_other 3.825 r_mcangle_it 3.256 r_mcangle_other 3.255 r_mcbond_it 2.252 r_mcbond_other 2.251 r_angle_other_deg 1.596 r_angle_refined_deg 1.592 r_chiral_restr 0.088 r_bond_refined_d 0.016 r_bond_other_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3358 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 40
Software Software Software Name Purpose GDA data collection SHARP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling