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1.18 Angstrom resolution crystal structure of uncharacterized protein lmo1340 from Listeria monocytogenes EGD-e
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 protein - 7.5 mg/mL in 10 mM Tris-HCl, pH 8.3, 0.5 M NaCl 5 mM BME, Crystallization - The PACT Suite (#D2: 0.1 M MMT buffer pH 5, 25 % (w/v) PEG1500, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.15 42.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.224 α = 90 b = 69.99 β = 95.61 c = 52.905 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Be lenses 2012-08-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.18 30 95.9 0.076 31.7 3.6 112400 112400 -3 12.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.18 1.2 97.4 0.459 2.33 2.9 5714
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.18 24.21 106618 106618 5628 95.86 0.14678 0.14503 0.1431 0.18116 0.1789 RANDOM 19.499
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -0.02 2.4 -2.76
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.178 r_dihedral_angle_2_deg 32.285 r_sphericity_bonded 15.36 r_rigid_bond_restr 12.872 r_dihedral_angle_3_deg 9.117 r_dihedral_angle_4_deg 6.941 r_dihedral_angle_1_deg 4.886 r_angle_refined_deg 1.594 r_angle_other_deg 0.718 r_chiral_restr 0.096
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.178 r_dihedral_angle_2_deg 32.285 r_sphericity_bonded 15.36 r_rigid_bond_restr 12.872 r_dihedral_angle_3_deg 9.117 r_dihedral_angle_4_deg 6.941 r_dihedral_angle_1_deg 4.886 r_angle_refined_deg 1.594 r_angle_other_deg 0.718 r_chiral_restr 0.096 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2670 Nucleic Acid Atoms Solvent Atoms 499 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection MLPHARE phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling