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Previously de-ionized HEW lysozyme batch crystallized in 0.2 M CoCl2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 193L PDB ENTRY 193L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 293 Previously de-ionized lysozyme, no buffer added, 0.2 M CoCl2, pH 4.5, Batch crystallization, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.286 α = 90 b = 79.286 β = 90 c = 37.729 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 2000-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 27.33 98.5 0.035 36.6 8.6 19553 17.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 97.4 0.386 4.1 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 193L 1.5 27.33 36299 17945 1495 98.08 0.12508 0.12223 0.1314 0.15866 0.1647 RANDOM 22.884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.98 r_sphericity_free 22.845 r_dihedral_angle_4_deg 19.691 r_dihedral_angle_3_deg 13.476 r_sphericity_bonded 12.217 r_dihedral_angle_1_deg 5.564 r_rigid_bond_restr 2.938 r_scbond_it 2.599 r_mcangle_it 2.098 r_mcbond_it 1.586
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.98 r_sphericity_free 22.845 r_dihedral_angle_4_deg 19.691 r_dihedral_angle_3_deg 13.476 r_sphericity_bonded 12.217 r_dihedral_angle_1_deg 5.564 r_rigid_bond_restr 2.938 r_scbond_it 2.599 r_mcangle_it 2.098 r_mcbond_it 1.586 r_mcbond_other 1.555 r_angle_refined_deg 1.341 r_angle_other_deg 0.865 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement AMoRE phasing CNS refinement HKL-2000 data reduction HKL-2000 data scaling TRUNCATE data scaling HKL-2000 data collection