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Human DYRK1A in complex with PKC412
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 0.1 M KSCN; 0.05M LiCl; 10% PEG 3350, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.764 α = 90 b = 87.895 β = 90 c = 229.921 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2013-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918409 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.597 48.25 99.7 55797 55625 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.597 2.75 98.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.597 48.25 52979 52841 2782 99.74 0.2101 0.20805 0.195 0.24946 0.2258 RANDOM 49.922
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.86 17.24 -13.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.729 r_dihedral_angle_4_deg 16.449 r_dihedral_angle_3_deg 13.694 r_dihedral_angle_1_deg 5.352 r_long_range_B_refined 3.994 r_long_range_B_other 3.977 r_mcangle_it 2.145 r_mcangle_other 2.141 r_scangle_other 2.031 r_mcbond_it 1.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.729 r_dihedral_angle_4_deg 16.449 r_dihedral_angle_3_deg 13.694 r_dihedral_angle_1_deg 5.352 r_long_range_B_refined 3.994 r_long_range_B_other 3.977 r_mcangle_it 2.145 r_mcangle_other 2.141 r_scangle_other 2.031 r_mcbond_it 1.222 r_mcbond_other 1.222 r_scbond_other 1.138 r_scbond_it 1.124 r_angle_refined_deg 1.11 r_angle_other_deg 0.708 r_chiral_restr 0.062 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11042 Nucleic Acid Atoms Solvent Atoms 211 Heterogen Atoms 172
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing REFMAC refinement XDS data reduction XDS data scaling