☰ Navigation Tabs
Joint neutron/x-ray structure of urate oxidase in complex with 8-hydroxyxanthine
NEUTRON DIFFRACTION - X-RAY DIFFRACTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 temperature-controlled batch 8.5 291 5 % PEG 8000, 0.1 M NACL, 0.1 M TRISHCL PD 8.5, 8 MG/ML URATE OXIDASE, temperature-controlled batch, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.98 58.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.18 α = 90 b = 96.26 β = 90 c = 105.51 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MAR scanner 345 mm plate Xenocs 2008-10-28 M SINGLE WAVELENGTH 2 1 neutron 293 IMAGE PLATE CUSTOM-MADE 2008-08-30 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OTHER 1.54 2 NUCLEAR REACTOR OTHER 3.25-4.15
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 98.5 0.04 23.56 2 2.3 40.06 72.2 0.133 7.9 13179 13179
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.14 0.145 9.54 2 2.3 2.42 0.19 2.2 1328
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION 2.023 19.209 1.99 26344 1317 97.64 0.1678 0.1666 0.1648 0.1887 0.1843 19.13 NEUTRON DIFFRACTION 2.298 40.067 13174 663 71.08 0.2601 0.2586 0.2884
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 15.7423 5.5013 1.3615 14.5584 7.9063 6.4684
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.275 f_angle_d 2.409 f_bond_d 0.075 f_chiral_restr 0.048 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2328 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 14
Software Software Software Name Purpose LADI-III data collection MOLREP phasing PHENIX refinement LAUEGEN data reduction SCALA data scaling