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cathepsin K - chondroitin sulfate complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.5 290 24% (v/v) 2-methyl-2,4-pentanediol, 100 mM sodium acetate and 100 mM calcium chloride, pH 4.5, VAPOR DIFFUSION, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.11 41.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.717 α = 90 b = 67.504 β = 90 c = 92.869 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 38.29 99.7 12228
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.02 38.29 12228 1361 99.51 0.14939 0.14643 0.1523 0.1765 0.1811 RANDOM 33.572
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.02 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.026 r_dihedral_angle_4_deg 16.136 r_dihedral_angle_3_deg 13.069 r_dihedral_angle_1_deg 5.591 r_angle_refined_deg 1.284 r_mcangle_it 1.197 r_angle_other_deg 0.877 r_scbond_it 0.694 r_mcbond_other 0.64 r_mcbond_it 0.639
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.026 r_dihedral_angle_4_deg 16.136 r_dihedral_angle_3_deg 13.069 r_dihedral_angle_1_deg 5.591 r_angle_refined_deg 1.284 r_mcangle_it 1.197 r_angle_other_deg 0.877 r_scbond_it 0.694 r_mcbond_other 0.64 r_mcbond_it 0.639 r_chiral_restr 0.087 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1637 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 91
Software Software Software Name Purpose ADSC data collection PHASES phasing REFMAC refinement MOSFLM data reduction SCALA data scaling