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Crystal Structure of Sulfamidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 25% (w/v) polyethylene glycol (PEG) 3350, 200 mM MgCl2 and 100 mM HEPES buffer, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.21 44.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.38 α = 90 b = 107.9 β = 104.07 c = 79.79 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99989 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 98.7 0.089 7.83 134186 -3 45.081
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.04 88.8 0.011 1.06
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 44.3 67884 3447 99.84 0.1939 0.192 0.1974 0.2299 0.2299 RANDOM 44.9877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 -1.44 0.07 -1.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.485 r_dihedral_angle_4_deg 16.449 r_dihedral_angle_3_deg 15.06 r_dihedral_angle_1_deg 6.367 r_mcangle_it 2.485 r_mcbond_it 1.664 r_mcbond_other 1.664 r_angle_refined_deg 1.564 r_angle_other_deg 1.027 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.485 r_dihedral_angle_4_deg 16.449 r_dihedral_angle_3_deg 15.06 r_dihedral_angle_1_deg 6.367 r_mcangle_it 2.485 r_mcbond_it 1.664 r_mcbond_other 1.664 r_angle_refined_deg 1.564 r_angle_other_deg 1.027 r_chiral_restr 0.087 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.004 r_gen_planes_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7591 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 172
Software Software Software Name Purpose XSCALE data scaling PHASER phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction