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Orange species of bacteriorhodopsin from Halobacterium salinarum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C3W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 in meso 5.6 295 Crystals were obtained in a lipidic cubic phase of monoolein, pH 5.6, in meso, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.17 43.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.91 α = 90 b = 60.91 β = 90 c = 110.1 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2009-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 23.44 93.8 0.052 12.4 2.7 22526 22526 20.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.82 95.1 0.36 2.7 2.6 3327
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1c3w 1.73 23.44 22519 22519 1160 0.148 0.148 0.146 0.1454 0.19 0.1889 Random, consistent with ground state data
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d_prot 11.95 f_angle_d_prot 1.6 f_chiral_restr 0.084 f_bond_d_prot 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1737 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 189
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing PHENIX refinement MOSFLM data reduction SCALA data scaling