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Structure of Streptococcus pneumonia ParE in complex with AZ13053807
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 18-25% Peg4000, 0.2M Ammonium Acetate, 0.1M MIB, pH 7.0, inhibitor soak, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.238 α = 90 b = 94.552 β = 90 c = 61.153 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ VariMax HF 2008-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ DW
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 57.9 96.3 0.051 4.4 21760 20984 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 70.6 0.315 2.71
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 57.9 19879 19845 1080 96.04 0.18515 0.18294 0.1967 0.22661 0.237 RANDOM 34.247
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 -0.24 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.213 r_dihedral_angle_3_deg 13.005 r_dihedral_angle_4_deg 11.918 r_dihedral_angle_1_deg 5.428 r_scangle_it 4.758 r_scbond_it 2.97 r_mcangle_it 1.841 r_angle_refined_deg 1.684 r_mcbond_it 1.023 r_angle_other_deg 1.019
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.213 r_dihedral_angle_3_deg 13.005 r_dihedral_angle_4_deg 11.918 r_dihedral_angle_1_deg 5.428 r_scangle_it 4.758 r_scbond_it 2.97 r_mcangle_it 1.841 r_angle_refined_deg 1.684 r_mcbond_it 1.023 r_angle_other_deg 1.019 r_mcbond_other 0.309 r_chiral_restr 0.1 r_bond_refined_d 0.019 r_bond_other_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1485 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms 31
Software Software Software Name Purpose StructureStudio data collection AMoRE phasing REFMAC refinement d*TREK data reduction d*TREK data scaling