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crystal structure of hN33/Tusc3-peptide 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4M8G pdb entry 4M8G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 0.2 M KSCN,
10.5% PEG 8K, 10% PEG 1K in 100 mM cacodylic acid-NaOH, pH 6.5, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 1.94 36.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.769 α = 90 b = 62.235 β = 90 c = 64.551 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 39.77 96.2 0.052 18.2 9.1 68361 65763 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 4M8G 1.1 33.88 60538 2524 95.9 0.1378 0.13688 0.1369 0.16023 0.1608 RANDOM 14.656
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 0.14 0.08
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.906 r_dihedral_angle_2_deg 29.405 r_dihedral_angle_4_deg 12.834 r_dihedral_angle_3_deg 11.74 r_sphericity_bonded 8.685 r_dihedral_angle_1_deg 6.232 r_rigid_bond_restr 5.514 r_long_range_B_refined 3.485 r_long_range_B_other 3.014 r_scangle_other 2.817
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 30.906 r_dihedral_angle_2_deg 29.405 r_dihedral_angle_4_deg 12.834 r_dihedral_angle_3_deg 11.74 r_sphericity_bonded 8.685 r_dihedral_angle_1_deg 6.232 r_rigid_bond_restr 5.514 r_long_range_B_refined 3.485 r_long_range_B_other 3.014 r_scangle_other 2.817 r_scbond_other 2.488 r_scbond_it 2.387 r_mcangle_other 2.143 r_mcangle_it 1.971 r_mcbond_it 1.796 r_mcbond_other 1.795 r_angle_refined_deg 1.594 r_angle_other_deg 1.263 r_chiral_restr 0.091 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.005 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1309 Nucleic Acid Atoms Solvent Atoms 194 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling