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Crystal structure of Trypanosoma brucei protein arginine methyltransferase 7 complex with AdoHcy
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 100mM MES, 20% PEG 1000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.591 α = 90 b = 40.926 β = 131.26 c = 90.838 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 0.9792
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 37966
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 37.8 37966 2001 99.64 0.14943 0.14767 0.1596 0.18254 0.1947 RANDOM 18.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 0.11 -0.75 0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.787 r_sphericity_free 22.594 r_dihedral_angle_4_deg 18.763 r_dihedral_angle_3_deg 12.513 r_rigid_bond_restr 8.966 r_sphericity_bonded 6.853 r_dihedral_angle_1_deg 5.627 r_angle_other_deg 3.622 r_long_range_B_other 2.821 r_long_range_B_refined 2.816
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.787 r_sphericity_free 22.594 r_dihedral_angle_4_deg 18.763 r_dihedral_angle_3_deg 12.513 r_rigid_bond_restr 8.966 r_sphericity_bonded 6.853 r_dihedral_angle_1_deg 5.627 r_angle_other_deg 3.622 r_long_range_B_other 2.821 r_long_range_B_refined 2.816 r_scangle_other 2.647 r_scbond_other 2.289 r_scbond_it 2.288 r_mcangle_other 1.964 r_mcangle_it 1.949 r_mcbond_it 1.526 r_mcbond_other 1.488 r_angle_refined_deg 1.217 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2666 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 26
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling