☰ Navigation Tabs
Gamma subunit of the translation initiation factor 2 from Sulfolobus solfataricus in nucleotide-free form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AHO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 301 25mM Tris-HCl, 400mM NaCl, 10mM 2-mercaptoethanol, 25mM Na-HEPES, 25mM MgSO4, 0.8M Li2SO4, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 301K
Crystal Properties Matthews coefficient Solvent content 4.84 74.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.815 α = 90 b = 95.815 β = 90 c = 165.24 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2012-05-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.149 82.99 99.9 0.0568 18.01 5.86 48518 48518 40.41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.25 99.7 0.374 3.83 5.87 6088
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2AHO 2.149 47.908 2 48428 47620 2410 98.21 0.1922 0.1904 0.1884 0.1951 0.2282 0.2349 RANDOM 42.5425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.563 f_angle_d 1.127 f_chiral_restr 0.076 f_bond_d 0.007 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3080 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 148
Software Software Software Name Purpose XDS data scaling PHASER phasing PHENIX refinement XDS data reduction SADABS data scaling