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HEWL co-crystallised with Carboplatin in non-NaCl conditions: crystal 1 processed using the XDS software package
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W1Y PDB ENTRY 2W1Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 294 2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 1 week after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.88 34.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.82 α = 90 b = 76.82 β = 90 c = 36.47 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD APEX II CCD 2013-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39.41 63.4 0.422 8.9 7765 4924 4 0.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.8 3.935 0.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W1Y 2.3 34.38 0.5 4 7765 4924 248 99.6 0.18871 0.18577 0.1899 0.24835 0.2447 RANDOM 24.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 -0.57 1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.026 r_dihedral_angle_4_deg 18.484 r_dihedral_angle_3_deg 15.086 r_dihedral_angle_1_deg 7.345 r_long_range_B_other 5.845 r_long_range_B_refined 5.841 r_scangle_other 3.151 r_scbond_it 2.274 r_scbond_other 2.273 r_mcangle_it 2.017
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.026 r_dihedral_angle_4_deg 18.484 r_dihedral_angle_3_deg 15.086 r_dihedral_angle_1_deg 7.345 r_long_range_B_other 5.845 r_long_range_B_refined 5.841 r_scangle_other 3.151 r_scbond_it 2.274 r_scbond_other 2.273 r_mcangle_it 2.017 r_mcangle_other 2.016 r_angle_refined_deg 1.644 r_mcbond_it 1.181 r_mcbond_other 1.18 r_angle_other_deg 0.879 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms 41
Software Software Software Name Purpose APEX data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling