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Crystal structure of TENCON variant G10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TES PDB ENTRY 3TES
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 0.1 M Tris, pH 8.5, 2.5 M sodium formate, 5% isopropanol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.07 59.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.34 α = 90 b = 80.34 β = 90 c = 73.52 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD RIGAKU SATURN 944 VARIMAX HF 2010-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 92.3 0.034 4.1 19740 19740 -3 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 52.8 0.154 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3TES 1.92 15 18684 18684 1009 92.3 0.19617 0.19617 0.19416 0.1997 0.23464 0.237 RANDOM 30.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.22 -0.44 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.585 r_scbond_it 30.748 r_scangle_it 30.319 r_dihedral_angle_3_deg 13.059 r_dihedral_angle_4_deg 7.942 r_dihedral_angle_1_deg 6.44 r_mcangle_it 4.602 r_mcbond_it 2.688 r_angle_refined_deg 1.23 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.585 r_scbond_it 30.748 r_scangle_it 30.319 r_dihedral_angle_3_deg 13.059 r_dihedral_angle_4_deg 7.942 r_dihedral_angle_1_deg 6.44 r_mcangle_it 4.602 r_mcbond_it 2.688 r_angle_refined_deg 1.23 r_chiral_restr 0.09 r_bond_refined_d 0.009 r_gen_planes_refined
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1452 Nucleic Acid Atoms Solvent Atoms 183 Heterogen Atoms 1
Software Software Software Name Purpose StructureStudio data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling