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Crystal structure of Escherichia coli SdiA in the space group C2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 287 0.1M 4-(2-Hydroxyethyl)piperazine-1-ethanesulfonic acid, 0.2M Lithium sulfate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 3.15 60.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.284 α = 90 b = 68.691 β = 126.47 c = 69.278 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD RAYONIX MX225HE SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0000 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.26 30 95.9 0.073 14.7 3.1 16343 15672
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.26 78.1 0.34 2 2.2 1310
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.26 29.24 16343 15522 819 95.35 0.21573 0.21263 0.27564 0.2691 RANDOM 35.659
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.86 -0.57 1.93 -0.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.107 r_dihedral_angle_4_deg 21.525 r_dihedral_angle_3_deg 18.752 r_dihedral_angle_1_deg 5.197 r_scangle_it 3.386 r_scbond_it 2.138 r_mcangle_it 1.418 r_angle_refined_deg 1.411 r_mcbond_it 0.864 r_symmetry_hbond_refined 0.362
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.107 r_dihedral_angle_4_deg 21.525 r_dihedral_angle_3_deg 18.752 r_dihedral_angle_1_deg 5.197 r_scangle_it 3.386 r_scbond_it 2.138 r_mcangle_it 1.418 r_angle_refined_deg 1.411 r_mcbond_it 0.864 r_symmetry_hbond_refined 0.362 r_nbtor_refined 0.3 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.182 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1941 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 28
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling