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Hexameric Form II RuBisCO from Rhodopseudomonas palustris, activated and complexed with 2-CABP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 60 mM Tris-HCl, 20 % (w/w) PEG 4000, and 10 % (v/v) glycerol , pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.09 41.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.033 α = 66.51 b = 100.72 β = 108.32 c = 100.69 γ = 95.41
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.000 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.38 80 98.1 0.179 6.4 3.3 101179
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.47 97 0.563 3.2 10018
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.38 71.29 100509 5088 97.61 0.2658 0.2632 0.2633 0.3153 0.3134 RANDOM 14.8726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.87 -0.32 0.53 -1.67 0.66 -1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.634 r_dihedral_angle_3_deg 14.654 r_dihedral_angle_4_deg 14.155 r_dihedral_angle_1_deg 4.916 r_mcangle_it 4.784 r_scbond_it 4.219 r_mcbond_it 3.957 r_angle_refined_deg 1.577 r_chiral_restr 0.115 r_bond_refined_d 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.634 r_dihedral_angle_3_deg 14.654 r_dihedral_angle_4_deg 14.155 r_dihedral_angle_1_deg 4.916 r_mcangle_it 4.784 r_scbond_it 4.219 r_mcbond_it 3.957 r_angle_refined_deg 1.577 r_chiral_restr 0.115 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21128 Nucleic Acid Atoms Solvent Atoms 470 Heterogen Atoms 132
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling EPMR phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection