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Structure of the Als3 adhesin from Candida albicans, residues 1-299 (mature sequence) in complex with hepta-threonine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LE8 PDB ENTRY 4LE8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 293.15 20% v/v PEG400, 30% w/v PEG4000, 100 mM sodium citrate, 50 mM ammonium acetate, pH 5.6, VAPOR DIFFUSION, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.26 45.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.36 α = 90 b = 58.18 β = 114.49 c = 57.18 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M mirrors 2012-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91730 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 52.036 92.2 0.054 6.6 3.4 53890 2 2 12.095
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 89.9 0.179 7.7 6.8 7562
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4LE8 1.4 29.09 2 48467 5405 92.7676 0.14046 0.1401 0.1383 0.1783 0.1766 RANDOM 16.506
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 1.35 0.74 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.496 r_dihedral_angle_4_deg 12.388 r_dihedral_angle_3_deg 10.746 r_dihedral_angle_1_deg 6.789 r_scangle_it 5.638 r_scbond_it 4.106 r_mcangle_it 3.07 r_mcbond_it 1.995 r_rigid_bond_restr 1.962 r_angle_refined_deg 1.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.496 r_dihedral_angle_4_deg 12.388 r_dihedral_angle_3_deg 10.746 r_dihedral_angle_1_deg 6.789 r_scangle_it 5.638 r_scbond_it 4.106 r_mcangle_it 3.07 r_mcbond_it 1.995 r_rigid_bond_restr 1.962 r_angle_refined_deg 1.762 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2305 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling