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Crystal Structure Analysis of FKBP52, Complex with I63
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q1C PDB ENTRY 1Q1C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 293 25% PEG6000, 0.1 M Tris-HCl, pH 8.0, 4% DMSO, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.38 48.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.592 α = 90 b = 42.351 β = 105.75 c = 76.811 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 73.928 96.9 0.057 0.057 15.9 3.6 31620 31620 18.71
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 82.6 0.305 0.305 2.5 3.1 3897
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q1C 1.7 20 31585 31585 1608 96.6 0.1703 0.1703 0.1684 0.1687 0.2051 0.204 RANDOM 21.1067
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.88 -0.18 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.37 r_dihedral_angle_4_deg 13.404 r_dihedral_angle_3_deg 11.707 r_dihedral_angle_1_deg 6.298 r_scangle_it 3.189 r_scbond_it 2.114 r_angle_refined_deg 1.339 r_mcangle_it 1.142 r_mcbond_it 0.75 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.37 r_dihedral_angle_4_deg 13.404 r_dihedral_angle_3_deg 11.707 r_dihedral_angle_1_deg 6.298 r_scangle_it 3.189 r_scbond_it 2.114 r_angle_refined_deg 1.339 r_mcangle_it 1.142 r_mcbond_it 0.75 r_nbtor_refined 0.312 r_nbd_refined 0.204 r_symmetry_vdw_refined 0.155 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.15 r_chiral_restr 0.093 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1840 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 42
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction