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Structure of the P450 OleT with a C20 fatty acid substrate bound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IZO pdb entry 1IZO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2 M magnesium chloride
0.1 M Tris, 10% w/v PEG 8K, 10% w/v PEG 1K, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.24 45.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.63 α = 90 b = 59.63 β = 90 c = 244.17 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-02-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.976 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 33.6 100 15317 15317
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1IZO 2.5 33.6 15317 15317 811 100 0.19878 0.19523 0.1928 0.26914 0.263 RANDOM 15.339
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.35 -0.35 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.849 r_dihedral_angle_4_deg 18.313 r_dihedral_angle_3_deg 16.142 r_dihedral_angle_1_deg 6.202 r_scangle_it 3.328 r_scbond_it 2.027 r_angle_refined_deg 1.472 r_mcangle_it 1.184 r_angle_other_deg 0.904 r_mcbond_it 0.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.849 r_dihedral_angle_4_deg 18.313 r_dihedral_angle_3_deg 16.142 r_dihedral_angle_1_deg 6.202 r_scangle_it 3.328 r_scbond_it 2.027 r_angle_refined_deg 1.472 r_mcangle_it 1.184 r_angle_other_deg 0.904 r_mcbond_it 0.602 r_mcbond_other 0.118 r_chiral_restr 0.084 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3382 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 65
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling