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Tankyrase 2 in complex with 4'-nitro flavone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3U9H PDB ENTRY 3U9H
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2 M Li2SO4, 0.1 M Tris HCl 24 % PEG3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.46 49.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.98 α = 90 b = 98.35 β = 90 c = 118.69 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL Pilatus 2M 2013-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.920 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.89 99.4 0.182 8.99 6.6 31656 31656 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 95.9 0.912 2.07 6.2 2205
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3U9H 2.1 29.89 30072 30072 1583 99.43 0.18313 0.18313 0.18099 0.22476 0.2175 RANDOM 22.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.47 0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.817 r_dihedral_angle_4_deg 14.8 r_dihedral_angle_3_deg 13.672 r_dihedral_angle_1_deg 6.495 r_angle_refined_deg 1.504 r_angle_other_deg 0.785 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.817 r_dihedral_angle_4_deg 14.8 r_dihedral_angle_3_deg 13.672 r_dihedral_angle_1_deg 6.495 r_angle_refined_deg 1.504 r_angle_other_deg 0.785 r_chiral_restr 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3347 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 68
Software Software Software Name Purpose GDA data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling