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Crystal structure of Drosophila Suppressor of Fused
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4KM8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 16% PEG 3350, 0.2M Magnesium acetate, vapor diffusion, hanging drop, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.824 α = 90 b = 113.367 β = 90 c = 131.147 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2012-10-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1.000 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 50 92.4 0.137 9 9.2 14179
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 100 0.387 9.3 1507
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4KM8 2.68 50 14144 707 92.05 0.2502 0.2477 0.2471 0.2971 0.3027 RANDOM 37.1516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -1.25 1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.825 r_dihedral_angle_3_deg 16.765 r_dihedral_angle_4_deg 13.549 r_dihedral_angle_1_deg 5.216 r_angle_refined_deg 1.019 r_scangle_it 0.943 r_mcangle_it 0.608 r_scbond_it 0.537 r_mcbond_it 0.326 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.825 r_dihedral_angle_3_deg 16.765 r_dihedral_angle_4_deg 13.549 r_dihedral_angle_1_deg 5.216 r_angle_refined_deg 1.019 r_scangle_it 0.943 r_mcangle_it 0.608 r_scbond_it 0.537 r_mcbond_it 0.326 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3490 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction