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Structure of the P4509 BM3 A82F F87V heme domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 277 20% PEG 3000, pH 6, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.6 52.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.27 α = 90 b = 151.67 β = 95.89 c = 60.8 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2011-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.97 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 47 100 0.068 90135 90135
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.86 0.472
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.82 47 90135 89743 4731 100 0.18485 0.18268 0.1828 0.225 0.2227 RANDOM 22.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 -0.07 -0.98 -0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.384 r_dihedral_angle_4_deg 14.822 r_dihedral_angle_3_deg 13.913 r_dihedral_angle_1_deg 6.75 r_scangle_it 5.118 r_scbond_it 3.363 r_mcangle_it 2.141 r_angle_refined_deg 1.976 r_mcbond_it 1.294 r_angle_other_deg 1.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.384 r_dihedral_angle_4_deg 14.822 r_dihedral_angle_3_deg 13.913 r_dihedral_angle_1_deg 6.75 r_scangle_it 5.118 r_scbond_it 3.363 r_mcangle_it 2.141 r_angle_refined_deg 1.976 r_mcbond_it 1.294 r_angle_other_deg 1.078 r_mcbond_other 0.407 r_chiral_restr 0.127 r_bond_refined_d 0.026 r_gen_planes_refined 0.011 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7231 Nucleic Acid Atoms Solvent Atoms 824 Heterogen Atoms 96
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XDS data scaling