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Crystal Structure of UBIG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 287 0.1M HEPES pH7.5 and 20% polyethylene glycol 10000, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 2.48 50.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.848 α = 90 b = 58.584 β = 105.26 c = 40.168 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 IMAGE PLATE MAR scanner 345 mm plate 2010-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 0.9994
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 29.51
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 29.51 14774 777 97.33 0.18482 0.18271 0.1893 0.22459 0.2257 RANDOM 28.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 -0.98 -0.03 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.144 r_dihedral_angle_4_deg 18.726 r_dihedral_angle_3_deg 13.976 r_dihedral_angle_1_deg 5.667 r_angle_other_deg 3.648 r_mcangle_it 2.434 r_scbond_it 2.098 r_mcbond_it 1.531 r_mcbond_other 1.531 r_angle_refined_deg 1.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.144 r_dihedral_angle_4_deg 18.726 r_dihedral_angle_3_deg 13.976 r_dihedral_angle_1_deg 5.667 r_angle_other_deg 3.648 r_mcangle_it 2.434 r_scbond_it 2.098 r_mcbond_it 1.531 r_mcbond_other 1.531 r_angle_refined_deg 1.232 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_other 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1643 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling