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Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase fromThermobifida fusca YX in complex with CoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 0.2 M Ammonium acetate, 0.1 M bis-Tris pH 5.5, 25 % PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.18 61.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.888 α = 90 b = 106.888 β = 90 c = 106.888 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Be Lenses/Diamond Laue Mono 2013-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 43.67 99.03 0.083 0.083 27.1 6.9 46157 46157 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.693 88.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 43.67 46157 46157 2451 99.03 0.13747 0.13747 0.13658 0.1359 0.15375 0.1541 RANDOM 21.588
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.827 r_dihedral_angle_4_deg 21.14 r_dihedral_angle_3_deg 11.572 r_dihedral_angle_1_deg 6.35 r_angle_refined_deg 2.099 r_angle_other_deg 0.99 r_chiral_restr 0.14 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.827 r_dihedral_angle_4_deg 21.14 r_dihedral_angle_3_deg 11.572 r_dihedral_angle_1_deg 6.35 r_angle_refined_deg 2.099 r_angle_other_deg 0.99 r_chiral_restr 0.14 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1878 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 52
Software Software Software Name Purpose HKL-3000 phasing MLPHARE phasing DM model building SHELXD phasing SHELXE model building BUCCANEER model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling DM phasing BUCCANEER phasing