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Crystal Structure of Human Anaplastic Lymphoma Kinase in complex with 7-azaindole based inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3LCS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.1M Hepes pH 7.5, 20% PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.98 37.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.794 α = 90 b = 56.503 β = 90 c = 104.536 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 92 0.08 11.1 4.1 8211 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.8 91.9 0.473 2.6 4 799
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3LCS 2.7 50 7358 370 87.02 0.2529 0.25109 0.2464 0.28964 0.2928 RANDOM 46.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.31 -2.06 4.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.313 r_dihedral_angle_3_deg 15.305 r_dihedral_angle_4_deg 13.849 r_dihedral_angle_1_deg 5.039 r_angle_refined_deg 1.181 r_angle_other_deg 0.715 r_scangle_it 0.616 r_mcangle_it 0.494 r_scbond_it 0.377 r_mcbond_it 0.284
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.313 r_dihedral_angle_3_deg 15.305 r_dihedral_angle_4_deg 13.849 r_dihedral_angle_1_deg 5.039 r_angle_refined_deg 1.181 r_angle_other_deg 0.715 r_scangle_it 0.616 r_mcangle_it 0.494 r_scbond_it 0.377 r_mcbond_it 0.284 r_nbd_refined 0.19 r_nbd_other 0.158 r_xyhbond_nbd_refined 0.117 r_symmetry_vdw_other 0.117 r_symmetry_vdw_refined 0.093 r_nbtor_other 0.078 r_chiral_restr 0.055 r_mcbond_other 0.029 r_bond_refined_d 0.006 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1946 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 29
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling