☰ Navigation Tabs
The 2.2 A crystal structure of CYP154C5 from Nocardia farcinica in complex with androstenedione
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.2 M MgCHO2 in the reservoir, condition mixed 1:1 from protein stock and reservoir, cocrystallisation with steroid , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.44 49.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.8 α = 90 b = 102.8 β = 90 c = 217.52 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2011-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 82.393 93 0.076 7.6 2.4 40488 40488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 82.8 0.339 0.339 2.4 2.2 5278
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 51.4 40105 2020 92.08 0.1867 0.1835 0.1744 0.2477 0.228 RANDOM 35.4107
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -21.63 -21.63 43.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.302 r_dihedral_angle_3_deg 13.94 r_dihedral_angle_4_deg 13.473 r_dihedral_angle_1_deg 7.077 r_mcangle_it 2.95 r_mcbond_it 2.046 r_mcbond_other 2.046 r_angle_refined_deg 1.256 r_angle_other_deg 0.73 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.302 r_dihedral_angle_3_deg 13.94 r_dihedral_angle_4_deg 13.473 r_dihedral_angle_1_deg 7.077 r_mcangle_it 2.95 r_mcbond_it 2.046 r_mcbond_other 2.046 r_angle_refined_deg 1.256 r_angle_other_deg 0.73 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_gen_planes_other 0.004 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6268 Nucleic Acid Atoms Solvent Atoms 321 Heterogen Atoms 145
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection