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Structure of P51G Cyanovirin-N swapped dimer in the P21212 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EZM PDB ENTRY 3EZM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 295 40% ethanol, 0.1 M sodium phosphate/citrate, pH 4.2, 5% w/v PEG1000, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.14 42.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.313 α = 90 b = 62.981 β = 90 c = 114.17 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV++ MIRRORS 2011-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 52.31 92.1 0.072 13.3 8.75 30944 28499 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 1.96 86.5 0.396 3.5 8.18 1718
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3EZM 2 52.31 3 24223 22999 1224 92.34 0.21786 0.21524 0.2232 0.26582 0.2693 RANDOM 53.215
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 2.35 -1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.232 r_dihedral_angle_4_deg 19.479 r_dihedral_angle_3_deg 16.154 r_dihedral_angle_1_deg 6.184 r_scangle_it 2.315 r_scbond_it 1.516 r_angle_refined_deg 1.503 r_mcangle_it 1.203 r_mcbond_it 0.699 r_chiral_restr 0.112
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.232 r_dihedral_angle_4_deg 19.479 r_dihedral_angle_3_deg 16.154 r_dihedral_angle_1_deg 6.184 r_scangle_it 2.315 r_scbond_it 1.516 r_angle_refined_deg 1.503 r_mcangle_it 1.203 r_mcbond_it 0.699 r_chiral_restr 0.112 r_bond_refined_d 0.014 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3072 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms
Software Software Software Name Purpose StructureStudio data collection PHASER phasing REFMAC refinement d*TREK data reduction d*TREK data scaling