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P113S mutant of E. coli Cystathionine beta-lyase MetC inhibited by reaction with L-Ala-P
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CL1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.2 293 20% PEG400, 0.15M CACL2, 0.1 M HEPES/NAOH (PH 8.2), VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 38.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.97 α = 90 b = 153.126 β = 90 c = 150.835 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate osmic 2011-10-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 19.4 99.9 11.6 89828 89828
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.69 93.7 9.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1CL1 1.61 19.4 81153 81153 4280 95.42 0.16325 0.16325 0.16154 0.166 0.19532 0.1977 RANDOM 11.541
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.04 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.111 r_dihedral_angle_4_deg 24.257 r_dihedral_angle_3_deg 12.366 r_dihedral_angle_1_deg 6.639 r_scangle_it 4.339 r_scbond_it 2.884 r_angle_refined_deg 2.02 r_mcangle_it 1.879 r_mcbond_it 1.251 r_angle_other_deg 1.149
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.111 r_dihedral_angle_4_deg 24.257 r_dihedral_angle_3_deg 12.366 r_dihedral_angle_1_deg 6.639 r_scangle_it 4.339 r_scbond_it 2.884 r_angle_refined_deg 2.02 r_mcangle_it 1.879 r_mcbond_it 1.251 r_angle_other_deg 1.149 r_mcbond_other 0.47 r_chiral_restr 0.209 r_bond_refined_d 0.026 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5996 Nucleic Acid Atoms Solvent Atoms 503 Heterogen Atoms 46
Software Software Software Name Purpose MAR345dtb data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling