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structure of Polymerase-DNA complex, dna
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 15% MPD, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 4.6
Crystal Properties Matthews coefficient Solvent content 2.77 55.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.65 α = 90 b = 57.08 β = 94.92 c = 110.23 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 50 100 0.102 8.4 3.4 44132 44132
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.45 99.2 0.53 2.7 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.32 35.18 44132 2358 98.93 0.21137 0.20876 0.2067 0.26236 0.2615 RANDOM 24.704
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 -0.65 -1.64 1.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.258 r_dihedral_angle_3_deg 17.38 r_dihedral_angle_4_deg 15.84 r_dihedral_angle_1_deg 6.267 r_angle_refined_deg 1.781 r_chiral_restr 0.115 r_bond_refined_d 0.014 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5376 Nucleic Acid Atoms 1294 Solvent Atoms 324 Heterogen Atoms 58
Software Software Software Name Purpose RSDQ data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling