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Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, R48C/T77C/D75N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 290 0.17 M Ammonium Sulfate, 25.5% (w/v) Peg 4000, 15% Glycerol , pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.06 40.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.585 α = 90 b = 72.336 β = 90 c = 94.694 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD Bruker Platinum 135 2012-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR-H 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 57.48 99.1 0.1191 13.01 6.88 8721 8640 3 20.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.34 91.6 0.4191 3.62 4.18 939
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.25 57.48 3 8721 8233 405 99.05 0.2156 0.21431 0.2172 0.24229 0.2546 RANDOM 23.598
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.94 1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.313 r_dihedral_angle_4_deg 23.637 r_dihedral_angle_3_deg 13.653 r_angle_other_deg 3.614 r_dihedral_angle_1_deg 3.177 r_angle_refined_deg 1.369 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_gen_planes_other 0.012 r_gen_planes_refined 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.313 r_dihedral_angle_4_deg 23.637 r_dihedral_angle_3_deg 13.653 r_angle_other_deg 3.614 r_dihedral_angle_1_deg 3.177 r_angle_refined_deg 1.369 r_chiral_restr 0.083 r_bond_refined_d 0.015 r_gen_planes_other 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1317 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 5
Software Software Software Name Purpose PROTEUM PLUS data collection AMoRE phasing REFMAC refinement PROTEUM PLUS data reduction PROTEUM PLUS data scaling