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Crystal structure of kirola (Act d 11)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.75 293 0.1 M Bis-Tris, 0.2 M magnesium chloride, 0.5% deoxycholate, 24% w/v PEG3350, pH 5.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.43 49.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.781 α = 90 b = 71.781 β = 90 c = 113.817 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.9 0.052 0.052 30.8 5.7 28517 28517 -3 17.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 100 0.538 0.538 2.5 5.8 1380
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 50 27027 27027 1437 99.95 0.17112 0.17112 0.16943 0.17 0.20336 0.2087 RANDOM 24.127
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.04 0.09 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.036 r_dihedral_angle_4_deg 18.12 r_dihedral_angle_3_deg 12.423 r_dihedral_angle_1_deg 5.404 r_scangle_it 4.862 r_scbond_it 3.006 r_angle_other_deg 2.292 r_mcangle_it 1.958 r_angle_refined_deg 1.663 r_mcbond_it 1.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.036 r_dihedral_angle_4_deg 18.12 r_dihedral_angle_3_deg 12.423 r_dihedral_angle_1_deg 5.404 r_scangle_it 4.862 r_scbond_it 3.006 r_angle_other_deg 2.292 r_mcangle_it 1.958 r_angle_refined_deg 1.663 r_mcbond_it 1.076 r_mcbond_other 0.141 r_chiral_restr 0.11 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_gen_planes_other 0.007 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1213 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 10
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing SHELXCD phasing SHELXE model building MLPHARE phasing DM model building RESOLVE model building ARP/wARP model building CCP4 model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling DM phasing RESOLVE phasing CCP4 phasing