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Crystal structure of aspartyl phosphate phosphatase F from B.subtilis in complex with its inhibitory peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 294 1M ammonium sulphate, 17% glycerol, 0.1M tris pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 4.85 74.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 220.791 α = 90 b = 220.791 β = 90 c = 220.791 γ = 90
Symmetry Space Group I 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS PILATUS 6M Channel-cut Si(111) + KB focusing mirrors 2012-09-26 M SINGLE WAVELENGTH 2 1 CCD MARMOSAIC 225 mm CCD 2010-09-23
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 1.07220 ALBA XALOC 2 SYNCHROTRON ESRF BEAMLINE BM14 1.07131 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 49.37 100 0.097 0.095 31.3 22 16988 16991 1 1 107.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.26 100 0.265 0.265 3.3 22.3 2427
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 3.1 47.07 2 16969 15637 1332 99.92 0.18962 0.18648 0.18648 0.1891 0.22686 0.2288 RANDOM 96.074
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.226 r_dihedral_angle_3_deg 23.887 r_dihedral_angle_4_deg 18.057 r_dihedral_angle_1_deg 5.744 r_angle_refined_deg 1.711 r_chiral_restr 0.108 r_bond_refined_d 0.015 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3187 Nucleic Acid Atoms Solvent Atoms 18 Heterogen Atoms
Software Software Software Name Purpose xaloc data collection MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling