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Structure of the MNTR FE2+ complex with E site metal binding
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F5D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 100 MM HEPES, 7.0, 90 MM LITHIUM SULFATE, 20% 1,2-PROPANEDIOL, 10 MM ASCORBIC ACID, 1 MM FERROUS SULFATE , VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.53 51.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.98 α = 90 b = 75.23 β = 90 c = 97.4 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 2010-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 22 96.8 0.109 9.2 6.2 26399
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 97.4 0.595 2.7 6.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 1.9 21.99 24688 1213 90.3 0.233 0.23 0.229 0.283 0.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -9.0356 -2.2218 11.2574
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.139 f_angle_d 0.91 f_chiral_restr 0.061 f_bond_d 0.007 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2083 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 34
Software Software Software Name Purpose EPMR phasing PHENIX refinement MOSFLM data reduction SCALA data scaling