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Crystal structure of H. volcanii small archaeal modifier protein 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277.15 100 mM Na cacodylate (pH 6.5), 15-20% (w/v) PEG 8000, 0.2 M Ca acetate, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 1.97 37.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.928 α = 90 b = 43.05 β = 102.84 c = 61.974 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2010-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.075 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 50 98.6 0.042 0.042 35.9 5.9 51004 50290 2 2 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.17 89.7 0.256 0.256 5.8 5.3 2295
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.15 35.06 50290 47731 2547 98.75 0.166 0.14004 0.1386 0.16636 0.1793 RANDOM 7.432
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.05 -0.23 -0.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.553 r_dihedral_angle_4_deg 22.863 r_dihedral_angle_3_deg 11.066 r_dihedral_angle_1_deg 5.889 r_scangle_it 3.838 r_scbond_it 2.513 r_mcangle_it 1.751 r_angle_refined_deg 1.314 r_mcbond_it 1.105 r_rigid_bond_restr 0.975
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.553 r_dihedral_angle_4_deg 22.863 r_dihedral_angle_3_deg 11.066 r_dihedral_angle_1_deg 5.889 r_scangle_it 3.838 r_scbond_it 2.513 r_mcangle_it 1.751 r_angle_refined_deg 1.314 r_mcbond_it 1.105 r_rigid_bond_restr 0.975 r_angle_other_deg 0.837 r_mcbond_other 0.37 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1274 Nucleic Acid Atoms Solvent Atoms 334 Heterogen Atoms 5
Software Software Software Name Purpose ADSC data collection PHENIX model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing