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Kinesin motor domain in the ADP-MG-ALFX state in complex with tubulin and a DARPIN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RYC PDB ENTRIES 3RYC, 2P4N, 2XEE experimental model PDB 2P4N PDB ENTRIES 3RYC, 2P4N, 2XEE experimental model PDB 2XEE PDB ENTRIES 3RYC, 2P4N, 2XEE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 293 PEG, PIPES BUFFER, PH 6.8, 0.8 MM ALCL3, 4 MM NAF, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.44 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.05 α = 90 b = 160.54 β = 90 c = 174.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-08-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.979 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.19 59.14 80.3 0.129 19 25.8 29641 94.06
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.19 3.27 21.4 0.476 4.56 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 3RYC, 2P4N, 2XEE 3.19 59.14 29641 1519 80.25 0.1784 0.1767 0.1998 0.2113 0.2233 RANDOM 80.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -15.3645 5.305 10.0595
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.06 t_omega_torsion 2.8 t_angle_deg 1.23 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 20.06 t_omega_torsion 2.8 t_angle_deg 1.23 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10505 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 100
Software Software Software Name Purpose AMoRE phasing BUSTER refinement XDS data reduction XSCALE data scaling SAWAYA data scaling