4HAK

Multicopper Oxidase CueO mutant E506A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5293100mM Acetate-Na pH5.0, 22% PEG 4000, 5% Isopropanol, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2344.73

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.439α = 90
b = 90.867β = 102.7
c = 53.244γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL38B11.0000SPring-8BL38B1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.491858

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.430.287171462299.940.160470.159230.18378RANDOM12.225
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.17-0.240.06
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.69
r_dihedral_angle_4_deg18.781
r_dihedral_angle_3_deg12.011
r_sphericity_free8.697
r_dihedral_angle_1_deg6.373
r_scangle_it3.641
r_sphericity_bonded2.728
r_scbond_it2.422
r_mcangle_it1.702
r_angle_refined_deg1.387
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.69
r_dihedral_angle_4_deg18.781
r_dihedral_angle_3_deg12.011
r_sphericity_free8.697
r_dihedral_angle_1_deg6.373
r_scangle_it3.641
r_sphericity_bonded2.728
r_scbond_it2.422
r_mcangle_it1.702
r_angle_refined_deg1.387
r_rigid_bond_restr1.384
r_mcbond_other1.152
r_mcbond_it1.067
r_angle_other_deg0.848
r_chiral_restr0.078
r_bond_refined_d0.01
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3651
Nucleic Acid Atoms
Solvent Atoms477
Heterogen Atoms9

Software

Software
Software NamePurpose
REFMACrefinement