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The Structure of a GCN5-Related N-Acetyltransferase from Kribbella flavida
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 297 0.1M HEPES:NaOH pH 7.5, 1.4M Sodium Citrate, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.02 39.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.482 α = 90 b = 64.913 β = 100.68 c = 56.569 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-07-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97931, 0.97945 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 50 95.8 0.1 10.9 4.6 30480 30480 -3 16.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.39 92.5 0.351 3.9 1467
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.37 18.45 30373 30373 1541 95.76 0.1196 0.1196 0.1175 0.1587 0.1899 RANDOM 22.4968
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -1.65 0.86 -0.3
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.871 r_dihedral_angle_2_deg 33.307 r_dihedral_angle_4_deg 17.185 r_dihedral_angle_3_deg 12.548 r_sphericity_bonded 11.727 r_dihedral_angle_1_deg 6.188 r_rigid_bond_restr 3.763 r_angle_refined_deg 1.689 r_angle_other_deg 0.881 r_chiral_restr 0.113
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.871 r_dihedral_angle_2_deg 33.307 r_dihedral_angle_4_deg 17.185 r_dihedral_angle_3_deg 12.548 r_sphericity_bonded 11.727 r_dihedral_angle_1_deg 6.188 r_rigid_bond_restr 3.763 r_angle_refined_deg 1.689 r_angle_other_deg 0.881 r_chiral_restr 0.113 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1283 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building