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Crystal structure of the Spc24-Spc25/Cnn1 binding interface
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FTX PDB ENTRY 2FTX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 293.15 15% PEG6000, 5% glycerol; Drop volume: 0.2ul; Protein proportion: 50%; Protein concentration: 6 mg/ml, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 1.78 30.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.142 α = 90 b = 61.848 β = 90 c = 139.056 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 1.127 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 61.85 96.9 0.113 8.5 4.6 20020 19858 3 24.44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 87.1 0.577 2.5 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2FTX 2.01 37.09 19706 19706 1004 96.68 0.2092 0.2092 0.2067 0.258 0.2869 RANDOM 37.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.0799 -1.4656 1.3857
RMS Deviations Key Refinement Restraint Deviation f_other_torsion 2.95 f_omega_torsion 2.68 f_angle_deg 0.97 f_bond_d 0.01 f_dihedral_angle_d f_trig_c_planes f_gen_planes f_it f_nbd f_improper_torsion
RMS Deviations Key Refinement Restraint Deviation f_other_torsion 2.95 f_omega_torsion 2.68 f_angle_deg 0.97 f_bond_d 0.01 f_dihedral_angle_d f_trig_c_planes f_gen_planes f_it f_nbd f_improper_torsion f_pseud_angle f_chiral_improper_torsion f_sum_occupancies f_utility_distance f_utility_angle f_utility_torsion f_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2582 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 12
Software Software Software Name Purpose MxCuBE data collection PHASER phasing PHENIX refinement BUSTER refinement XDS data reduction SCALA data scaling