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Crystal structure of voltage sensing domain of Ci-VSP with fragment antibody (WT, 3.8 A)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Na Citrate, 0.1 M Li2SO4, 20% PEG 1000, 10% glycerol, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 5.1 75.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.29 α = 102.63 b = 94.24 β = 93.45 c = 193.95 γ = 105.25
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR 300 CCD M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 315 3 1 x-ray AREA DETECTOR Platus at 24-ID-C 4 1 x-ray
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B APS 23-ID-B 2 SYNCHROTRON APS BEAMLINE 23-ID-D APS 23-ID-D 3 SYNCHROTRON APS BEAMLINE 24-ID-C APS 24-ID-C 4 SYNCHROTRON APS BEAMLINE 24-ID-E APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.58 50 95.1 0.144 12.2 2.9 55790 55790 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.58 50 52942 2803 92.57 0.25022 0.24794 0.2455 0.29225 0.2907 RANDOM 149.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.24 0.1 -1.7 -5.2 -2.84 5.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.929 r_dihedral_angle_4_deg 13.389 r_dihedral_angle_3_deg 13.362 r_dihedral_angle_1_deg 5.483 r_angle_refined_deg 0.383 r_chiral_restr 0.03 r_gen_planes_refined 0.007 r_bond_refined_d 0.005 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.929 r_dihedral_angle_4_deg 13.389 r_dihedral_angle_3_deg 13.362 r_dihedral_angle_1_deg 5.483 r_angle_refined_deg 0.383 r_chiral_restr 0.03 r_gen_planes_refined 0.007 r_bond_refined_d 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17446 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose JBluce data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling