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Crystal structure of rcl with 5'-phiosphorothioate-adenosine
Crystallization Crystal Properties Matthews coefficient Solvent content 2.33 47.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.38 α = 90 b = 128.772 β = 90 c = 57.506 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-03-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97625 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.79 35.9 92.7 3.2 61110 56650 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.79 35.9 61110 53716 2882 92.42 0.1951 0.19366 0.1993 0.22172 0.2243 RANDOM 13.287
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.13 -1 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.535 r_dihedral_angle_4_deg 17.88 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 5.054 r_scangle_it 2.382 r_scbond_it 1.487 r_angle_other_deg 1.257 r_angle_refined_deg 1.189 r_mcangle_it 1.04 r_mcbond_it 0.559
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.535 r_dihedral_angle_4_deg 17.88 r_dihedral_angle_3_deg 14.389 r_dihedral_angle_1_deg 5.054 r_scangle_it 2.382 r_scbond_it 1.487 r_angle_other_deg 1.257 r_angle_refined_deg 1.189 r_mcangle_it 1.04 r_mcbond_it 0.559 r_chiral_restr 0.244 r_mcbond_other 0.132 r_bond_refined_d 0.01 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3942 Nucleic Acid Atoms Solvent Atoms 626 Heterogen Atoms 107
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling