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Spore photoproduct lyase C140S mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FHC wt structure without substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 200 mM Li-sulfate, 100 mM Tris/HCl, 19-27% PEG800, 70 mM HEGA-8, anaerobically , pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.85 56.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.21 α = 90 b = 63.09 β = 90 c = 143.29 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9786 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.35 98.2 0.078 33427 33427 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 96.4 0.0454
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT wt structure without substrate 2 47.35 31721 31721 1706 98.25 0.211 0.211 0.20918 0.2096 0.24523 0.2454 RANDOM 24.649
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.08 -0.17 1.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.63 r_dihedral_angle_4_deg 14.893 r_dihedral_angle_3_deg 13.224 r_dihedral_angle_1_deg 5.419 r_scangle_it 1.548 r_angle_refined_deg 0.987 r_scbond_it 0.899 r_angle_other_deg 0.742 r_mcangle_it 0.645 r_mcbond_it 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.63 r_dihedral_angle_4_deg 14.893 r_dihedral_angle_3_deg 13.224 r_dihedral_angle_1_deg 5.419 r_scangle_it 1.548 r_angle_refined_deg 0.987 r_scbond_it 0.899 r_angle_other_deg 0.742 r_mcangle_it 0.645 r_mcbond_it 0.333 r_chiral_restr 0.057 r_mcbond_other 0.048 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2802 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 59
Software Software Software Name Purpose HEIDI data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling