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Crystal structure of the C-terminal domain of ClpB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 5.5 294 sodium citrate, isopropanol, pH 5.5, hanging drop, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.77 55.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 129.238 α = 90 b = 129.238 β = 90 c = 122.972 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 48173
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.35 44.55 48173 2120 99.42 0.2541 0.2524 0.2729 0.2915 0.3112 RANDOM 19.8005
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.15 6.15 -12.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.427 r_dihedral_angle_3_deg 16.305 r_dihedral_angle_4_deg 16.008 r_scangle_it 7.991 r_scbond_it 5.427 r_dihedral_angle_1_deg 4.112 r_rigid_bond_restr 3.863 r_mcangle_it 3.509 r_mcbond_it 2.238 r_angle_refined_deg 1.283
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.427 r_dihedral_angle_3_deg 16.305 r_dihedral_angle_4_deg 16.008 r_scangle_it 7.991 r_scbond_it 5.427 r_dihedral_angle_1_deg 4.112 r_rigid_bond_restr 3.863 r_mcangle_it 3.509 r_mcbond_it 2.238 r_angle_refined_deg 1.283 r_chiral_restr 0.069 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7368 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction