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Structure of the Styrene Monooxygenase Flavin Reductase (SMOB) from Pseudomonas putida S12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RZ0 PDB entry 1rz0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 100 mM Tris, 8.5, 1.7-1.9 M (NH4)2SO4, 200-300 mM NH4NO3, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.82 32.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.031 α = 90 b = 130.031 β = 90 c = 95.27 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 50 99.9 0.0105 13.4 6 88220 87338 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.27 99 0.068 4.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1rz0 2.3 48.47 76075 3913 99.8 0.188 0.185 0.1983 0.248 0.2422 RANDOM 15.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.19 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.491 r_dihedral_angle_4_deg 20.44 r_dihedral_angle_3_deg 16.94 r_dihedral_angle_1_deg 7.883 r_scangle_it 4.802 r_scbond_it 3.287 r_mcangle_it 2.123 r_angle_refined_deg 1.962 r_mcbond_it 1.229 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.491 r_dihedral_angle_4_deg 20.44 r_dihedral_angle_3_deg 16.94 r_dihedral_angle_1_deg 7.883 r_scangle_it 4.802 r_scbond_it 3.287 r_mcangle_it 2.123 r_angle_refined_deg 1.962 r_mcbond_it 1.229 r_chiral_restr 0.13 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13834 Nucleic Acid Atoms Solvent Atoms 577 Heterogen Atoms 698
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling